README for Figure 2b.zip 
*** This file contains the predicted structure represented in Figure 2b of 
Article: Identification, characterization and classification of Nucleoid-Associated Proteins
Authors: Samuel Schwab, Remus T. Dame
Journal: Molecular Microbiology
Corresponding author: rtdame@chem.leidenuniv.nl

Legend Figure 2b:
The DNA-bridging filament formed by model DNA bridging NAP H-NS from Escherichia coli. The zoom-in shows the homotetramer of H-NS as predicted by AlphaFold2. The DNA, the DNA binding domain, the The homotetramer of MJ1647 from Methanocaldococcus jannaschii as predicted by AlphaFold2 (Ofer et al., 2023). The DNA, the DNA binding dimeric histone fold domain, and the C-terminal dimer-dimer domain are colored blue, green, and pink, respectively. The DNA was placed by superimposing the DNA-binding histone domain from the DNA co-crystal structure of HMfB from Methanothermus fervidus (PDB: 5T5K) (Mattiroli et al., 2017).

 *** The data were obtained by generating multiple sequence alignments with MMseqs2, which were subsequently used as inputs for LocalColabFold to predict the protein structures with AlphaFold2 and AlphaFold2-Multimer. The multiple sequence alignments, the predicted aligned errors, the predicted local distance difference tests, and the structure files in PDB format are provided.